Publications
2025
Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo
Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Yuxuan Chen, Behrus Puladi, Fen-hua Zhao, Kelsey L. Pomykala, Jens Kleesiek, Alejandro F. Frangi, Jan Egger
ACM Comput. Surv.
Virtual reality support during systemic cancer therapy to improve anxiety/depressive symptoms and reduce toxicity in patients with gastrointestinal cancers—OncoVR
Stefan Kasper, S. Liszio, K. Schorrmann, M. Gerigk, S. Jovic, Oliver Basu, K. Kostbade, B. Goraus, Abdelrahman Elsakka, Behrus Puladi, Jens Kleesiek, Martin Schuler, Gijs Luijten, Jan Egger
ESMO Gastrointestinal Oncology
MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision
Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Kuestner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Loeffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nuernberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Roehrig, Frank Hoelzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hoerst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Thomas Küstner, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Fabian Hörst, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille
Biomedical Engineering / Biomedizinische Technik
Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-Guided Radiotherapy
Nikoo Moradi, André Ferreira, Behrus Puladi, Jens Kleesiek, Emad Fatemizadeh, Gijs Luijten, Victor Alves, Jan Egger
Head and Neck Tumor Segmentation for MR-Guided Applications 2024
Brain Tumour Removing and Missing Modality Generation using 3D WDM
André Ferreira, Gijs Luijten, Behrus Puladi, Jens Kleesiek, Victor Alves, Jan Egger
arXiv
Improved Multi-Task Brain Tumour Segmentation with Synthetic Data Augmentation
André Ferreira, Tiago Jesus, Behrus Puladi, Jens Kleesiek, Victor Alves, Jan Egger
arXiv
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Puladi
Computer Methods and Programs in Biomedicine
A Semi-automatic Cranial Implant Design Tool Based on Rigid ICP Template Alignment and Voxel Space Reconstruction
Michael Lackner, Behrus Puladi, Jens Kleesiek, Jan Egger, Jianning Li
arXiv
Advancing Healthcare Through Open Science: StudierFenster and MedShapeNet
Christina Gsaxner, Gijs Luijten, Jianning Li, Jens Kleesiek, Behrus Puladi, Jan Egger
Deep PCCT: Photon Counting Computed Tomography Deep Learning Applications Review
Ana Carolina Alves, André Ferreira, Gijs Luijten, Jens Kleesiek, Behrus Puladi, Jan Egger, Victor Alves
arXiv
Diminished Reality for Emerging Applications in Medicine through Inpainting
Christina Gsaxner, Shohei Mori, Gijs Luijten, Viet Duc Vu, Timo van Meegdenburg, Gabriele A. Krombach, Jens Kleesiek, Eck Ulrich, Nassir Navab, Yan Guo, Xiaojun Chen, Frank Hölzle, Behrus Puladi, Jan Egger
Response to the comment on “The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review”
Behrus Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger
International Journal of Oral and Maxillofacial Surgery
ChatGPT in healthcare: A taxonomy and systematic review
Jianning Li, Amin Dada, Behrus Puladi, Jens Kleesiek, Jan Egger
Computer Methods and Programs in Biomedicine
CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Puladi
Zenodo
What is Diminished Virtuality? A Directional and Layer-Based Taxonomy for the Reality-Virtuality Continuum
Jan Egger, Christina Gsaxner, Jens Kleesiek, Behrus Puladi
JMIR XR and Spatial Computing 2023
3D surgical instrument collection for computer vision and extended reality
Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon-Sung Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Puladi, Jan Egger
Scientific Data
3D-COSI ~ 3D Collection of Surgical Instruments
Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon-Sung Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Puladi, Jan Egger
The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review
Behrus Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger
International Journal of Oral and Maxillofacial Surgery
Apple Vision Pro for Healthcare: \"The Ultimate Display\"?
Jan Egger, Christina Gsaxner, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Puladi
arXiv
Open-source skull reconstruction with MONAI
Jianning Li, André Ferreira, Behrus Puladi, Victor Alves, Michael Kamp, Moon-Sung Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger
SoftwareX 2022
Open-Source Skull Reconstruction with MONAI
Jianning Li, André Ferreira, Behrus Puladi, Victor Alves, Michael Kamp, Moon-Sung Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger
arXiv
Radiomics in Head and Neck Cancer Outcome Predictions
Maria Gonçalves, Christina Gsaxner, André Ferreira, Jianning Li, Behrus Puladi, Jens Kleesiek, Jan Egger, Victor Alves
Diagnostics