Marie Bauer

Marie Bauer

Software Engineer, NLP

Institute for AI in Medicine, Germany

Marie completed her Bachelor’s in General and Comparative Linguistics in 2023 and has since begun a new degree in Software Engineering. Combining knowledge from both fields she now assists NLP research projects at IKIM.

Publications

2026

Configurable Clinical Information Extraction with Agentic RAG: What Works, What Breaks, and Why Osman Alperen Çinar-Koraş, Marie Bauer, Sameh Khattab, Merlin Engelke, Moon-Sung Kim, Stephan Settelmeier, Shigeyasu Sugawara, Fabian Freisleben, Felix Nensa, Jens Kleesiek arXiv AIANO: Enhancing Information Retrieval with AI-Augmented Annotation Sameh Khattab, Marie Bauer, Lukas Heine, Till Rostalski, Jens Kleesiek, Julian Friedrich arXiv

2025

Does Biomedical Training Lead to Better Medical Performance? Amin Dada, Osman Alperen Koraş, Marie Bauer, Jean-Philippe Corbeil, Amanda Butler Contreras, Constantin Seibold, Kaleb Smith, Julian Friedrich, Jens Kleesiek Proceedings of the Fourth Workshop on Generation, Evaluation and Metrics (GEM²) MeDiSumQA: Patient-Oriented Question-Answer Generation from Discharge Letters Amin Dada, Osman Alperen Koraş, Marie Bauer, Amanda Butler, Kaleb Smith, Jens Kleesiek, Julian Friedrich arXiv

2024

Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding Ahmad Idrissi-Yaghir, Amin Dada, Henning Schäfer, Kamyar Arzideh, Giulia Baldini, Jan Trienes, Max Hasin, Jeanette Bewersdorff, Cynthia S. Schmidt, Marie Bauer, Kaleb Smith, Jiang Bian, Yonghui Wu, Jörg Schlötterer, Torsten Zesch, Peter A. Horn, Christin Seifert, Felix Nensa, Jens Kleesiek, Christoph M. Friedrich Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024) CLUE: A Clinical Language Understanding Evaluation for LLMs Amin Dada, Marie Bauer, Amanda Butler Contreras, Osman Alperen Koraş, Constantin Seibold, Kaleb Smith, Jens Kleesiek arXiv Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding Ahmad Idrissi-Yaghir, Amin Dada, Henning Schäfer, Kamyar Arzideh, Giulia Baldini, Jan Trienes, Max Hasin, Jeanette Bewersdorff, Cynthia S. Schmidt, Marie Bauer, Kaleb Smith, Jiang Bian, Yonghui Wu, Jörg Schlötterer, Torsten Zesch, Peter A. Horn, Christin Seifert, Felix Nensa, Jens Kleesiek, Christoph M. Friedrich