Publications
2026
The autoPET3 Challenge: Automated Lesion Segmentation in Whole-Body PET/CT – Multitracer Multicenter Generalization
Jakob Dexl, Katharina Jeblick, Andreas Mittermeier, Balthasar Schachtner, Anna Theresa Stüber, Johanna Topalis, Maximilian R. Rokuss, Fabian Isensee, Klaus Maier-Hein, Hamza Kalisch, Jens Kleesiek, Constantin Seibold, Hussain Alasmawi, Lap Yan Lennon Chan, Yixuan Yuan, Alexander Jaus, Rainer Stiefelhagen, Pauline Ornela Megne Choudja, Konstantin Nikolaou, Christian la Fougère, Sergios Gatidis, Matthias P. Fabritius, Maurice Heimer, Gizem Abaci, Lalith Kumar Shiyam Sundar, Rudolf A. Werner, Jens Ricke, Clemens C. Cyran, Thomas Küstner, Michael Ingrisch
arXiv 2025
AutoPET Challenge on Fully Automated Lesion Segmentation in Oncologic PET/CT Imaging, Part 2: Domain Generalization
Jakob Dexl, Sergios Gatidis, Marcel Früh, Katharina Jeblick, Andreas Mittermeier, Anna Theresa Stüber, Balthasar Schachtner, Johanna Topalis, Matthias P. Fabritius, Sijing Gu, Gowtham Krishnan Murugesan, Jeff VanOss, Jin Ye, Junjun He, Anissa Alloula, Bartłomiej W. Papież, Zacharia Mesbah, Romain Modzelewski, Matthias Hadlich, Zdravko Marinov, Rainer Stiefelhagen, Fabian Isensee, Klaus Maier-Hein, Adrian Galdran, Konstantin Nikolaou, Christian la Fougère, Moon-Sung Kim, Nico Kallenberg, Jens Kleesiek, Ken Herrmann, Rudolf A. Werner, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner
Journal of Nuclear Medicine
International Retrospective Observational Study of Continual Learning for AI on Endotracheal Tube Placement from Chest Radiographs
Emma Chen, Agustina Saenz, Oishi Banerjee, Henrik Marklund, Xiaoman Zhang, Shreya Johri, Hong-Yu Zhou, Luyang Luo, Subathra Adithan, Kay Wu, Siddhant Dogra, Vijay Janapa Reddi, Dominic Buensalido, Helen Kavnoudias, Roman Kloeckner, Lukas Müller, Emmanuel Salinas-Miranda, Maria José Veloza Vega, Johannes Kolck, Tobias Penzkofer, Daiju Ueda, Shannon L. Walston, Armin Alvaro Quispe-Cornejo, Michele Salvagno, Christopher Lee, Jonathan Fournier, Rosa Patricia Castillo, Cibele Luna, Tara Bahramipour, Amanda Zuback, Rickmer Braren, Petra Jiraskova, Yutthaphan Wannasopha, Piyapong Khumrin, Desmond Lim Shi Wei Wei, James Thomas Patrick Decourcy Hallinan, Zhicheng Jiao, Thomas Yi, Juana Maria Plasencia Martinez, Nuria Isabel Casado Alarcon, Franz A. Fellner, Julian F. Niedermair, Derek Wu, Dongkeun Kim, Johannes Haubold, Lars Heiliger, Daniel Pérez-Chada, Pablo Pratesi, Ryan Cummings, Narges Razavian, Anastasia Oikonomou, William T. Tran, Thomas Küstner, Saif Afat, Adrienne N. Dula, Justin F. Rousseau, Franko Hržić, Michael Fuchsjäger, Pranav Rajpurkar
NEJM AI
MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision
Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Kuestner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Loeffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nuernberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Roehrig, Frank Hoelzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hoerst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Thomas Küstner, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Fabian Hörst, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille
Biomedical Engineering / Biomedizinische Technik 2024
Results from the autoPET challenge on fully automated lesion segmentation in oncologic PET/CT imaging
Sergios Gatidis, Marcel Früh, Matthias P. Fabritius, Sijing Gu, Konstantin Nikolaou, Christian la Fougère, Jin Ye, Junjun He, Yige Peng, Lei Bi, Jun Ma, Bo Wang, Jia Zhang, Yukun Huang, Lars Heiliger, Zdravko Marinov, Rainer Stiefelhagen, Jan Egger, Jens Kleesiek, Ludovic Sibille, Lei Xiang, Simone Bendazzoli, Mehdi Astaraki, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner
Nature Machine Intelligence 2023
The autoPET challenge: Towards fully automated lesion segmentation in oncologic PET/CT imaging
Sergios Gatidis, Marcel Früh, , Matthias Fabritius, Sijing Gu, Christian la Fougère, Jin Ye, Junjun He, Yige Peng, Lei Bi, Jun Ma, Bo Wang, Jia Zhang, Huang, Lars Heiliger, Zdravko Marinov, Rainer Stiefelhagen, Jan Egger, Jens Kleesiek, Ludovic Sibille, Lei Xiang, Simone Bendazolli, Mehdi Astaraki, Bernhard Schölkopf, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner 
