Lukas Heine

Lukas Heine

Teamleitung Ophthalmologie

Institut für Künstliche Intelligenz in der Medizin

Lukas ist Medizintechnik-Ingenieur mit einem Master in medizinischer Bild- und Datenverarbeitung von der Friedrich-Alexander-Universität Erlangen. Zu seinen Forschungsinteressen zählen medizinische Bildanalyse, Machine Learning und Computer Vision. Darüber hinaus unterstützt er Entwicklung und Betrieb beim Einsatz von Anwendungen in der Praxis.

Publikationen

2026

CellViT++: Energy-Efficient and Adaptive Cell Segmentation and Classification Using Foundation Models Fabian Hörst, Moritz Rempe, Helmut Becker, Lukas Heine, Julius Keyl, Jens Kleesiek Computer Methods and Programs in Biomedicine Choroidal vascularity across aging and the spectrum of age-related macular degeneration: an AI-based OCT study Benja Vahldiek, Lukas Heine, Anna Vahldiek, Jasper Schröter, Jan-Niklas Wolf, Michael Swora, Lars Reissberg, Laurenz Pauleikhoff, Jens Kleesiek, Daniel Pauleikhoff Graefe’s Archive for Clinical and Experimental Ophthalmology AIANO: Enhancing Information Retrieval with AI-Augmented Annotation Sameh Khattab, Marie Bauer, Lukas Heine, Till Rostalski, Jens Kleesiek, Julian Friedrich arXiv

2025

Automated measurement of macular neovascularization lesion size in nAMD using AI segmentation Anna Vahldiek, Lukas Heine, Benja Vahldiek, Jasper Schröter, Jan-Niklas Wolf, Michael Swora, Lars Reissberg, Laurenz Pauleikhoff, Jens Kleesiek, Daniel Pauleikhoff Graefe’s Archive for Clinical and Experimental Ophthalmology LiMeTrack: A lightweight biosample management platform for the multicenter SATURN3 consortium Florian Heyl, Jonas Gassenschmidt, Lukas Heine, Frederik Voigt, Jens Kleesiek, Oliver Stegle, Jens T. Siveke, Melanie Boerries, Roland F. Schwarz, Laura Godfrey medRxiv Three-Dimensional Quantification of Macular OCT Alterations Improves the Diagnostic Performance of Artificial Intelligence Models Lukas Heine, Anna Vahldiek, Benja Vahldiek, Fabian Hörst, Constantin Seibold, Mael Lever, Laurenz Pauleikhoff, Nikolaos Bechrakis, Daniel Pauleikhoff, Jens Kleesiek Translational Vision Science & Technology De-identification of medical imaging data: a comprehensive tool for ensuring patient privacy Moritz Rempe, Lukas Heine, Constantin Seibold, Fabian Hörst, Jens Kleesiek European Radiology Cracking the PUMA Challenge in 24 Hours with CellViT++ and nnU-Net Negar Shahamiri, Moritz Rempe, Lukas Heine, Jens Kleesiek, Fabian Hörst arXiv MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Kuestner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Loeffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nuernberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Roehrig, Frank Hoelzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hoerst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Thomas Küstner, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Fabian Hörst, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille Biomedical Engineering / Biomedizinische Technik Foreign object segmentation in chest x-rays through anatomy-guided shape insertion Constantin Seibold, Hamza Kalisch, Lukas Heine, Simon Reiß, Jens Kleesiek arXiv Spacewalker: Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data Lukas Heine, Fabian Hörst, Jana Fragemann, Gijs Luijten, Jan Egger, Fin Hendrik Bahnsen, Saquib Sarfraz, Jens Kleesiek, Constantin Seibold, M. Saquib Sarfraz Machine Learning Methods in Visualisation for Big Data (EuroVis Workshop) Three-Dimensional Quantification of Macular OCT Alterations Improves the Diagnostic Performance of Artificial Intelligence Models Lukas Heine, Anna Vahldiek, Benja Vahldiek, Fabian Hörst, Constantin Seibold, Mael Lever, Laurenz Pauleikhoff, Nikolaos Bechrakis, Daniel Pauleikhoff, Jens Kleesiek Translational Vision Science & Technology

2024

Anatomy-Guided Pathology Segmentation Alexander Jaus, Constantin Seibold, Simon Reiß, Lukas Heine, Anton Schily, Moon-Sung Kim, Fin Hendrik Bahnsen, Ken Herrmann, Rainer Stiefelhagen, Jens Kleesiek Medical Image Computing and Computer Assisted Intervention – MICCAI 2024

2023

CellViT: Vision Transformers for Precise Cell Segmentation and Classification Fabian Hörst, Moritz Rempe, Lukas Heine, Constantin Seibold, Julius Keyl, Giulia Baldini, Selma Ugurel, Jens T. Siveke, Barbara Grünwald, Jan Egger, Jens Kleesiek arXiv Lean Study Host: Towards an Automated Pipeline for Multi-Center Study Hosting Lukas Heine, Fabian Hörst, Enrico Nasca, Jens T. Siveke, Jan Egger, Moon-Sung Kim, Fin Hendrik Bahnsen, Jens Kleesiek Proceedings of the 57th Hawaii International Conference on System Sciences